(This falls squarely under the "Well, duh!" category, but remembering how long I used PHP without the benefit of a debugger myself, I figure it bears repeating.)
The flip side of Drupal's elegant and flexible system of hooks is that when you’re building a site that relies on lots of different modules, things can start to get a little bit slippery if you need to troubleshoot which module is hooking into the core and how/where/when.

